Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_08540 | Not Available | Negative | 2008485 - 2009432 | 35960.7 |
| hypothetical protein | DWZ06_08545 | Not Available | Negative | 2009456 - 2010994 | 55485.3 |
| duf3868 domain-containing protein | DWZ06_08550 | Not Available | Negative | 2011025 - 2012434 | 54375.8 |
| duf3575 domain-containing protein | DWZ06_08555 | Not Available | Negative | 2012441 - 2013013 | 21549.8 |
| duf3868 domain-containing protein | DWZ06_08560 | Not Available | Negative | 2013017 - 2014111 | 40136.9 |
| duf3575 domain-containing protein | DWZ06_08565 | Not Available | Negative | 2014140 - 2014706 | 21302.5 |
| site-specific integrase | DWZ06_08570 | Not Available | Negative | 2015053 - 2015982 | 35843.5 |
| hypothetical protein | DWZ06_08575 | Not Available | Positive | 2016265 - 2018883 | 98544.3 |
| type ii toxin-antitoxin system rele/pare family toxin | DWZ06_08580 | Not Available | Positive | 2019029 - 2019370 | 13792.8 |
| xre family transcriptional regulator | DWZ06_08585 | Not Available | Positive | 2019342 - 2019644 | 11061.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

