Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-1-phosphate guanylyltransferase | DWZ06_08380 | Not Available | Negative | 1975944 - 1976987 | 39487.5 |
| gdp-l-fucose synthase | DWZ06_08385 | Not Available | Negative | 1977002 - 1978084 | 41052.2 |
| gdp-mannose 4,6-dehydratase | DWZ06_08390 | Not Available | Negative | 1978105 - 1979184 | 40983.1 |
| glycosyltransferase | DWZ06_08395 | Not Available | Negative | 1979267 - 1980085 | 30999.0 |
| glycosyltransferase family 2 protein | DWZ06_08400 | Not Available | Negative | 1980114 - 1981001 | 35265.6 |
| putative colanic acid biosynthesis acetyltransferase | DWZ06_08405 | Not Available | Negative | 1981016 - 1981576 | 20756.4 |
| sdr family nad(p)-dependent oxidoreductase | DWZ06_08415 | Not Available | Negative | 1981976 - 1982743 | 27776.9 |
| ketoacyl-acp synthase iii | DWZ06_08420 | Not Available | Negative | 1982746 - 1983825 | 40289.6 |
| acyl carrier protein | DWZ06_08425 | Not Available | Negative | 1983829 - 1984047 | 8440.99 |
| hypothetical protein | DWZ06_08430 | Not Available | Negative | 1984060 - 1984641 | 22146.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

