Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DWZ06_08330 | Not Available | Positive | 1956583 - 1958151 | 60563.0 |
| enolase | DWZ06_08335 | Not Available | Negative | 1958256 - 1959551 | 46741.8 |
| glycoside hydrolase family 95 protein | DWZ06_08340 | Not Available | Positive | 1959717 - 1962161 | 92069.8 |
| glycoside hydrolase family 88 protein | DWZ06_08345 | Not Available | Positive | 1962210 - 1963409 | 45359.1 |
| duf4038 domain-containing protein | DWZ06_08350 | Not Available | Positive | 1963560 - 1965029 | 56363.5 |
| alpha-rhamnosidase | DWZ06_08355 | Not Available | Positive | 1965035 - 1969009 | 149783.0 |
| glycoside hydrolase family 127 protein | DWZ06_08360 | Not Available | Positive | 1969237 - 1971342 | 78760.8 |
| right-handed parallel beta-helix repeat-containing protein | DWZ06_08365 | Not Available | Positive | 1971367 - 1973190 | 68531.1 |
| alpha-rhamnosidase | DWZ06_08370 | Not Available | Positive | 1973205 - 1975349 | 81992.8 |
| hypothetical protein | DWZ06_08375 | Not Available | Negative | 1975512 - 1975940 | 16940.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

