Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectin esterase | DWZ06_00785 | Not Available | Positive | 202079 - 203803 | 63984.5 |
| hybrid sensor histidine kinase/response regulator | DWZ06_00790 | Not Available | Positive | 203999 - 208399 | 169225.0 |
| hypothetical protein | DWZ06_00795 | Not Available | Positive | 208594 - 209328 | 27039.4 |
| s9 family peptidase | DWZ06_00800 | Not Available | Positive | 209438 - 211879 | 94292.0 |
| aminoglycoside phosphotransferase | DWZ06_00805 | Not Available | Negative | 211968 - 213050 | 41591.0 |
| inorganic phosphate transporter | DWZ06_00810 | Not Available | Negative | 213158 - 215410 | 83827.5 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DWZ06_00815 | Not Available | Positive | 215692 - 217215 | 56236.2 |
| rod shape-determining protein | DWZ06_00820 | Not Available | Positive | 217328 - 218350 | 36937.0 |
| rod shape-determining protein mrec | DWZ06_00825 | Not Available | Positive | 218456 - 219304 | 31395.4 |
| rod shape-determining protein mred | DWZ06_00830 | Not Available | Positive | 219313 - 219813 | 18922.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

