Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_08270 | Not Available | Positive | 1944000 - 1944995 | 37534.9 |
| hypothetical protein | DWZ06_08275 | Not Available | Positive | 1944995 - 1945525 | 20088.5 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_08280 | Not Available | Negative | 1945538 - 1945951 | 15329.5 |
| dna-binding protein | DWZ06_08285 | Not Available | Negative | 1946101 - 1946574 | 16817.1 |
| duf4248 domain-containing protein | DWZ06_08290 | Not Available | Positive | 1946855 - 1947094 | 9222.05 |
| toprim domain-containing protein | DWZ06_08295 | Not Available | Negative | 1947203 - 1949209 | 74977.0 |
| is66-like element isbvu4 family transposase | DWZ06_08310 | Not Available | Positive | 1951257 - 1952870 | 61911.8 |
| atp-dependent dna helicase recq | DWZ06_08315 | Not Available | Positive | 1952992 - 1955385 | 90909.0 |
| hypothetical protein | DWZ06_08320 | Not Available | Negative | 1955488 - 1955694 | 8050.69 |
| hypothetical protein | DWZ06_08325 | Not Available | Negative | 1955734 - 1955934 | 7320.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

