Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-alanine antiporter | DWZ06_08220 | Not Available | Negative | 1927781 - 1929481 | 61072.4 |
| hypothetical protein | DWZ06_08225 | Not Available | Positive | 1929607 - 1930428 | 31598.5 |
| tetratricopeptide repeat protein | DWZ06_08230 | Not Available | Negative | 1930420 - 1932597 | 86004.3 |
| duf418 domain-containing protein | DWZ06_08235 | Not Available | Negative | 1932659 - 1933843 | 45032.6 |
| transcription-repair coupling factor | DWZ06_08240 | Not Available | Positive | 1933951 - 1937316 | 127080.0 |
| tonb family protein | DWZ06_08245 | Not Available | Positive | 1937581 - 1938267 | 25590.7 |
| transcriptional regulator | DWZ06_08250 | Not Available | Positive | 1938854 - 1939684 | 31555.8 |
| lipopolysaccharide biosynthesis protein | DWZ06_08255 | Not Available | Positive | 1940074 - 1941609 | 57299.2 |
| glycosyltransferase family 2 protein | DWZ06_08260 | Not Available | Positive | 1941612 - 1942712 | 42380.1 |
| 4fe-4s dicluster domain-containing protein | DWZ06_08265 | Not Available | Positive | 1942693 - 1943937 | 47102.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

