Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DWZ06_08170 | Not Available | Negative | 1917403 - 1918161 | 28645.4 |
| metallophosphoesterase | DWZ06_08175 | Not Available | Negative | 1918201 - 1919361 | 43737.4 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | DWZ06_08180 | Not Available | Negative | 1919376 - 1920263 | 33463.9 |
| dihydroorotase | DWZ06_08185 | Not Available | Negative | 1920260 - 1921600 | 49602.5 |
| polyprenol monophosphomannose synthase | DWZ06_08190 | Not Available | Negative | 1921597 - 1922346 | 28446.6 |
| porin family protein | DWZ06_08195 | Not Available | Negative | 1922499 - 1923125 | 23477.8 |
| duf4136 domain-containing protein | DWZ06_08200 | Not Available | Negative | 1923167 - 1923805 | 24018.1 |
| copper homeostasis protein | DWZ06_08205 | Not Available | Negative | 1923930 - 1924418 | 17145.3 |
| peptidase s41 | DWZ06_08210 | Not Available | Negative | 1924575 - 1925972 | 52269.7 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DWZ06_08215 | Not Available | Negative | 1926121 - 1927761 | 62643.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

