Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4348 domain-containing protein | DWZ06_08010 | Not Available | Positive | 1883587 - 1884447 | 33536.8 |
| udp-n-acetylmuramate dehydrogenase | DWZ06_08015 | Not Available | Positive | 1884459 - 1885472 | 37603.1 |
| mbl fold metallo-hydrolase | DWZ06_08020 | Not Available | Positive | 1885481 - 1886257 | 29140.4 |
| endonuclease iii | DWZ06_08025 | Not Available | Negative | 1886252 - 1886896 | 24101.6 |
| amidinotransferase | DWZ06_08030 | Not Available | Positive | 1887014 - 1887934 | 35540.8 |
| amidinotransferase | DWZ06_08035 | Not Available | Positive | 1887957 - 1888868 | 34260.9 |
| ornithine--oxo-acid transaminase | DWZ06_08040 | Not Available | Positive | 1888883 - 1890118 | 45621.9 |
| vut family protein | DWZ06_08045 | Not Available | Positive | 1890407 - 1891093 | 25083.7 |
| 7-cyano-7-deazaguanine synthase quec | DWZ06_08050 | Not Available | Positive | 1891214 - 1891882 | 24735.8 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DWZ06_08055 | Not Available | Positive | 1892104 - 1892559 | 17765.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

