Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DWZ06_07960 | Not Available | Positive | 1869805 - 1871172 | 51271.3 |
| ahpc/tsa family protein | DWZ06_07965 | Not Available | Positive | 1871180 - 1872358 | 44859.0 |
| is256 family transposase | DWZ06_07970 | Not Available | Positive | 1872983 - 1874215 | 46968.8 |
| carboxypeptidase regulatory-like domain-containing protein | DWZ06_07975 | Not Available | Negative | 1874280 - 1876595 | 82773.1 |
| hypothetical protein | DWZ06_07980 | Not Available | Negative | 1876615 - 1877937 | 50872.9 |
| aminodeoxychorismate synthase component i | DWZ06_07985 | Not Available | Positive | 1878328 - 1879311 | 37534.1 |
| 4-amino-4-deoxychorismate lyase | DWZ06_07990 | Not Available | Positive | 1879295 - 1879888 | 22693.3 |
| hypothetical protein | DWZ06_07995 | Not Available | Positive | 1879978 - 1881120 | 43009.4 |
| mfs transporter | DWZ06_08000 | Not Available | Negative | 1881117 - 1882313 | 43902.7 |
| phenylalanine--trna ligase subunit alpha | DWZ06_08005 | Not Available | Negative | 1882441 - 1883475 | 38981.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

