Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DWZ06_07905 | Not Available | Positive | 1854607 - 1855167 | 21971.5 |
| hypothetical protein | DWZ06_07910 | Not Available | Negative | 1855226 - 1856587 | 49069.1 |
| signal recognition particle protein | DWZ06_07920 | Not Available | Positive | 1858347 - 1859669 | 48854.7 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DWZ06_07925 | Not Available | Positive | 1859783 - 1860664 | 31535.7 |
| capa family protein | DWZ06_07930 | Not Available | Positive | 1861598 - 1862671 | 40883.5 |
| Trna-his | Not Available | Not Available | Positive | 1862747 - 1862823 | Not Available |
| sigma-70 family rna polymerase sigma factor | DWZ06_07940 | Not Available | Positive | 1862899 - 1863465 | 22575.3 |
| fecr family protein | DWZ06_07945 | Not Available | Positive | 1863538 - 1864620 | 41467.0 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_07950 | Not Available | Positive | 1864664 - 1868194 | 132036.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_07955 | Not Available | Positive | 1868109 - 1869689 | 60039.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

