Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_07855 | Not Available | Negative | 1837759 - 1839249 | 55807.4 |
| dicarboxylate/amino acid:cation symporter | DWZ06_07860 | Not Available | Negative | 1839359 - 1840540 | 42233.4 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_07865 | Not Available | Negative | 1840776 - 1842389 | 60328.0 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_07870 | Not Available | Negative | 1842408 - 1845824 | 125473.0 |
| fecr family protein | DWZ06_07875 | Not Available | Negative | 1845976 - 1846902 | 35762.9 |
| phosphoglycerate kinase | DWZ06_07880 | Not Available | Positive | 1847126 - 1848379 | 44034.9 |
| hypothetical protein | DWZ06_07885 | Not Available | Negative | 1848454 - 1849668 | 45675.3 |
| gamma-carboxymuconolactone decarboxylase | DWZ06_07890 | Not Available | Negative | 1849803 - 1850633 | 31046.8 |
| beta-hexosaminidase | DWZ06_07895 | Not Available | Negative | 1850867 - 1853290 | 91012.5 |
| duf1624 domain-containing protein | DWZ06_07900 | Not Available | Positive | 1853491 - 1854582 | 40496.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

