Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stas domain-containing protein | DWZ06_07800 | Not Available | Positive | 1824960 - 1826642 | 60541.7 |
| hypothetical protein | DWZ06_07805 | Not Available | Negative | 1826832 - 1827020 | 6806.25 |
| radical sam protein | DWZ06_07810 | Not Available | Negative | 1827553 - 1828329 | 29363.3 |
| helix-hairpin-helix domain-containing protein | DWZ06_07815 | Not Available | Negative | 1828375 - 1830447 | 81348.2 |
| duf4294 domain-containing protein | DWZ06_07820 | Not Available | Positive | 1830544 - 1831116 | 22018.9 |
| trmh family rna methyltransferase | DWZ06_07825 | Not Available | Negative | 1831147 - 1831683 | 19947.2 |
| tonb-dependent receptor | DWZ06_07830 | Not Available | Positive | 1832406 - 1834724 | 88581.0 |
| quinolinate synthase nada | DWZ06_07835 | Not Available | Positive | 1834827 - 1835819 | 36624.0 |
| non-canonical purine ntp diphosphatase | DWZ06_07840 | Not Available | Negative | 1836074 - 1836655 | 21352.7 |
| hypothetical protein | DWZ06_07850 | Not Available | Negative | 1837187 - 1837747 | 21357.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

