Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | DWZ06_00735 | Not Available | Positive | 181608 - 182540 | 35880.6 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_00740 | Not Available | Positive | 182596 - 185895 | 122190.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_00745 | Not Available | Positive | 185914 - 187602 | 64111.6 |
| beta-glycosidase | DWZ06_00750 | Not Available | Positive | 187688 - 190717 | 114597.0 |
| glycoside hydrolase family 2 | DWZ06_00755 | Not Available | Positive | 190720 - 194088 | 126868.0 |
| duf4968 domain-containing protein | DWZ06_00760 | Not Available | Positive | 194102 - 196486 | 91612.5 |
| hypothetical protein | DWZ06_00765 | Not Available | Positive | 196504 - 198504 | 74937.3 |
| cupin domain-containing protein | DWZ06_00770 | Not Available | Negative | 198598 - 199089 | 18182.0 |
| pectate lyase | DWZ06_00775 | Not Available | Positive | 199278 - 200891 | 61375.3 |
| hypothetical protein | DWZ06_00780 | Not Available | Positive | 200912 - 202072 | 43464.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

