Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ06_07745 | Not Available | Negative | 1802999 - 1806028 | 112977.0 |
| invertase | DWZ06_07755 | Not Available | Positive | 1808927 - 1809538 | 23063.3 |
| hypothetical protein | DWZ06_07760 | Not Available | Negative | 1810379 - 1810960 | 22509.9 |
| hypothetical protein | DWZ06_07765 | Not Available | Negative | 1810935 - 1811234 | 11716.9 |
| tonb-dependent receptor | DWZ06_07770 | Not Available | Positive | 1811426 - 1814470 | 114135.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_07775 | Not Available | Positive | 1814497 - 1816116 | 61287.8 |
| hypothetical protein | DWZ06_07780 | Not Available | Positive | 1816256 - 1819612 | 126653.0 |
| hybrid sensor histidine kinase/response regulator | DWZ06_07785 | Not Available | Positive | 1819753 - 1823739 | 150460.0 |
| rubrerythrin family protein | DWZ06_07790 | Not Available | Negative | 1823833 - 1824411 | 21626.4 |
| duf4884 domain-containing protein | DWZ06_07795 | Not Available | Positive | 1824592 - 1824861 | 10182.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

