Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DWZ06_07695 | Not Available | Positive | 1782113 - 1783840 | 67981.9 |
| duf1593 domain-containing protein | DWZ06_07700 | Not Available | Negative | 1783892 - 1785247 | 51247.5 |
| pectate lyase | DWZ06_07705 | Not Available | Negative | 1785264 - 1787405 | 81670.3 |
| s9 family peptidase | DWZ06_07710 | Not Available | Negative | 1787645 - 1789888 | 85800.0 |
| glycoside hydrolase family 127 protein | DWZ06_07715 | Not Available | Negative | 1789900 - 1792305 | 89650.8 |
| glycoside hydrolase | DWZ06_07720 | Not Available | Negative | 1792376 - 1794778 | 90015.0 |
| glycoside hydrolase family 97 protein | DWZ06_07725 | Not Available | Negative | 1794815 - 1797538 | 103449.0 |
| duf4859 domain-containing protein | DWZ06_07730 | Not Available | Negative | 1797737 - 1800001 | 84454.6 |
| duf4859 domain-containing protein | DWZ06_07735 | Not Available | Negative | 1800257 - 1801267 | 36202.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_07740 | Not Available | Negative | 1801299 - 1802978 | 63688.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

