Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | DWZ06_07645 | Not Available | Positive | 1772117 - 1772728 | 24627.9 |
| duf4861 domain-containing protein | DWZ06_07650 | Not Available | Negative | 1772786 - 1773958 | 42906.5 |
| gluconate 5-dehydrogenase | DWZ06_07655 | Not Available | Negative | 1774055 - 1774858 | 28590.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWZ06_07660 | Not Available | Negative | 1774895 - 1775737 | 31850.9 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DWZ06_07665 | Not Available | Negative | 1775908 - 1777308 | 52306.5 |
| dihydrolipoyl dehydrogenase | DWZ06_07670 | Not Available | Negative | 1777308 - 1778648 | 47635.7 |
| hypothetical protein | DWZ06_07675 | Not Available | Negative | 1778664 - 1779077 | 15716.4 |
| hypothetical protein | DWZ06_07680 | Not Available | Negative | 1779081 - 1779491 | 15494.5 |
| orf6n domain-containing protein | DWZ06_07685 | Not Available | Negative | 1779567 - 1780127 | 21509.0 |
| l-aspartate oxidase | DWZ06_07690 | Not Available | Positive | 1780283 - 1781863 | 58967.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

