Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DWZ06_07595 | Not Available | Positive | 1756335 - 1758548 | 83597.3 |
| phosphoribosylamine--glycine ligase | DWZ06_07600 | Not Available | Positive | 1758564 - 1759832 | 45595.0 |
| hypothetical protein | DWZ06_07605 | Not Available | Positive | 1759851 - 1760786 | 35940.9 |
| deda family protein | DWZ06_07610 | Not Available | Positive | 1760762 - 1761229 | 17015.3 |
| sam-dependent methyltransferase | DWZ06_07615 | Not Available | Positive | 1761234 - 1761917 | 26029.9 |
| hypothetical protein | DWZ06_07620 | Not Available | Negative | 1762270 - 1765269 | 110254.0 |
| arac family transcriptional regulator | DWZ06_07625 | Not Available | Negative | 1765327 - 1765824 | 19135.2 |
| zinc abc transporter substrate-binding protein | DWZ06_07630 | Not Available | Positive | 1766499 - 1767404 | 34083.5 |
| metal abc transporter atp-binding protein | DWZ06_07635 | Not Available | Positive | 1767414 - 1768181 | 28672.6 |
| duf2723 domain-containing protein | DWZ06_07640 | Not Available | Positive | 1768642 - 1772046 | 129183.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

