Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, which means it thrives in environments devoid of oxygen. This strain is of particular interest due to its association with Homo sapiens, indicating it is host-associated. Phocaeicola vulgatus is characterized by its single-cell arrangement and lack of mobility, as it does not possess flagella. The strain is mesophilic, suggesting it prefers moderate temperature ranges for optimal growth. With a unique biotic relationship as a free-living organism, it may play a role in the human microbiome, contributing to the complex interactions within the host's gut environment. Phocaeicola vulgatus strain AF29-13 contains one replicon and has a double membrane structure, which is typical for many bacteria and may influence its resilience and adaptability in host-associated habitats. The study of this strain can offer insights into the microbial communities residing in the human gut and their implications for human health. Given its anaerobic nature and role in the human microbiome, Phocaeicola vulgatus may contribute to various metabolic processes, including the fermentation of dietary fibers, which are essential for gut health. Understanding the specific functions and interactions of this bacterium within the microbiome could provide valuable information regarding the maintenance of gut homeostasis and the potential impact on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF29-13

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13 AF29-13.Scaf129, whole genome

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
u32 family peptidaseDWZ06_07545Not AvailableNegative1744086 - 174534847086.9
trna dihydrouridine synthase dusbDWZ06_07550Not AvailablePositive1745499 - 174648837212.5
duf2807 domain-containing proteinDWZ06_07555Not AvailableNegative1746584 - 174743529090.1
phosphatase pap2 family proteinDWZ06_07560Not AvailableNegative1747612 - 174858937786.7
nad(p)-dependent oxidoreductaseDWZ06_07565Not AvailableNegative1748580 - 174962640078.3
cation transporterDWZ06_07570Not AvailableNegative1749637 - 175053932965.4
ribonuclease rDWZ06_07575Not AvailablePositive1750670 - 175281781953.4
serine acetyltransferaseDWZ06_07580Not AvailablePositive1753118 - 175402632799.2
type ii toxin-antitoxin system hicb family antitoxinDWZ06_07585Not AvailablePositive1754177 - 17543687388.35
rna methyltransferaseDWZ06_07590Not AvailablePositive1754880 - 175632856320.4

Displaying genes 1441 – 1450 of 4010 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.