Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| u32 family peptidase | DWZ06_07545 | Not Available | Negative | 1744086 - 1745348 | 47086.9 |
| trna dihydrouridine synthase dusb | DWZ06_07550 | Not Available | Positive | 1745499 - 1746488 | 37212.5 |
| duf2807 domain-containing protein | DWZ06_07555 | Not Available | Negative | 1746584 - 1747435 | 29090.1 |
| phosphatase pap2 family protein | DWZ06_07560 | Not Available | Negative | 1747612 - 1748589 | 37786.7 |
| nad(p)-dependent oxidoreductase | DWZ06_07565 | Not Available | Negative | 1748580 - 1749626 | 40078.3 |
| cation transporter | DWZ06_07570 | Not Available | Negative | 1749637 - 1750539 | 32965.4 |
| ribonuclease r | DWZ06_07575 | Not Available | Positive | 1750670 - 1752817 | 81953.4 |
| serine acetyltransferase | DWZ06_07580 | Not Available | Positive | 1753118 - 1754026 | 32799.2 |
| type ii toxin-antitoxin system hicb family antitoxin | DWZ06_07585 | Not Available | Positive | 1754177 - 1754368 | 7388.35 |
| rna methyltransferase | DWZ06_07590 | Not Available | Positive | 1754880 - 1756328 | 56320.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

