Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (fe-s)-binding protein | DWZ06_07440 | Not Available | Positive | 1713592 - 1714332 | 27278.1 |
| lactate utilization protein | DWZ06_07445 | Not Available | Positive | 1714329 - 1715696 | 51539.4 |
| hypothetical protein | DWZ06_07450 | Not Available | Positive | 1715700 - 1716287 | 21730.2 |
| pyruvate formate lyase-activating protein | DWZ06_07455 | Not Available | Negative | 1716389 - 1717117 | 28010.6 |
| formate c-acetyltransferase | DWZ06_07460 | Not Available | Negative | 1717186 - 1719414 | 84089.3 |
| hypothetical protein | DWZ06_07465 | Not Available | Negative | 1719948 - 1721309 | 52456.9 |
| hypothetical protein | DWZ06_07475 | Not Available | Negative | 1722760 - 1722960 | 7681.78 |
| hypothetical protein | DWZ06_07480 | Not Available | Negative | 1722997 - 1723206 | 8039.05 |
| abc transporter atp-binding protein | DWZ06_07485 | Not Available | Negative | 1723348 - 1725186 | 68815.4 |
| glycosyltransferase | DWZ06_07490 | Not Available | Negative | 1725287 - 1727539 | 85834.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

