Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitronate monooxygenase | DWZ06_07340 | Not Available | Negative | 1690821 - 1691771 | 34187.3 |
| anaerobic c4-dicarboxylate transporter | DWZ06_07345 | Not Available | Positive | 1692013 - 1693311 | 45850.3 |
| l-asparaginase 2 | DWZ06_07350 | Not Available | Positive | 1693479 - 1694537 | 37843.8 |
| hypothetical protein | DWZ06_07355 | Not Available | Positive | 1694625 - 1695794 | 45056.2 |
| dicarboxylate/amino acid:cation symporter | DWZ06_07360 | Not Available | Negative | 1695999 - 1697177 | 42069.5 |
| decarboxylating nadp(+)-dependent phosphogluconate dehydrogenase | DWZ06_07365 | Not Available | Positive | 1697262 - 1698698 | 53142.1 |
| glucose-6-phosphate dehydrogenase | DWZ06_07370 | Not Available | Positive | 1698747 - 1700255 | 58278.9 |
| 6-phosphogluconolactonase | DWZ06_07375 | Not Available | Positive | 1700317 - 1701021 | 26417.3 |
| cytochrome d ubiquinol oxidase subunit ii | DWZ06_07380 | Not Available | Negative | 1701317 - 1702462 | 42780.5 |
| cytochrome ubiquinol oxidase subunit i | DWZ06_07385 | Not Available | Negative | 1702617 - 1704119 | 55185.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

