Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylmethionine--8-amino-7-oxononanoate transaminase | DWZ06_07285 | Not Available | Positive | 1680202 - 1681473 | 47742.2 |
| 8-amino-7-oxononanoate synthase | DWZ06_07290 | Not Available | Positive | 1681501 - 1682652 | 43109.2 |
| duf452 family protein | DWZ06_07295 | Not Available | Positive | 1682649 - 1683302 | 25130.3 |
| malonyl-[acyl-carrier protein] o-methyltransferase bioc | DWZ06_07300 | Not Available | Positive | 1683314 - 1684069 | 28797.8 |
| atp-dependent dethiobiotin synthetase biod | DWZ06_07305 | Not Available | Positive | 1684084 - 1684728 | 24303.0 |
| hypothetical protein | DWZ06_07315 | Not Available | Negative | 1685172 - 1685897 | 25732.9 |
| diaminopimelate epimerase | DWZ06_07320 | Not Available | Negative | 1685912 - 1686097 | 7191.76 |
| atp-binding cassette domain-containing protein | DWZ06_07325 | Not Available | Positive | 1686622 - 1688085 | 55724.8 |
| dihydrodipicolinate synthase family protein | DWZ06_07330 | Not Available | Positive | 1688233 - 1689165 | 34028.5 |
| sodium:solute symporter | DWZ06_07335 | Not Available | Positive | 1689179 - 1690612 | 52090.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

