Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWZ06_00680 | Not Available | Negative | 163329 - 164285 | 35996.2 |
| pts sugar transporter subunit iic | DWZ06_00685 | Not Available | Negative | 164304 - 165695 | 49974.0 |
| glycoside hydrolase family 88 protein | DWZ06_00690 | Not Available | Positive | 165985 - 167214 | 47138.2 |
| pectin esterase | DWZ06_00695 | Not Available | Positive | 167229 - 168179 | 35913.6 |
| tonb-dependent receptor | DWZ06_00700 | Not Available | Positive | 168398 - 171670 | 118880.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_00705 | Not Available | Positive | 171703 - 173868 | 79682.8 |
| glycoside hydrolase | DWZ06_00710 | Not Available | Positive | 174248 - 176236 | 75041.2 |
| hypothetical protein | DWZ06_00720 | Not Available | Positive | 176780 - 179326 | 94982.8 |
| carbohydrate esterase | DWZ06_00725 | Not Available | Positive | 179389 - 180909 | 55706.4 |
| rna polymerase sigma-70 factor | DWZ06_00730 | Not Available | Positive | 180974 - 181537 | 22518.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

