Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DWZ06_07185 | Not Available | Negative | 1657720 - 1658565 | 30944.9 |
| oligopeptide transporter, opt family | DWZ06_07190 | Not Available | Negative | 1658599 - 1660590 | 70043.7 |
| hypothetical protein | DWZ06_07195 | Not Available | Negative | 1660676 - 1661437 | 30020.0 |
| metallophosphoesterase | DWZ06_07200 | Not Available | Negative | 1661403 - 1662209 | 31228.2 |
| duf1573 domain-containing protein | DWZ06_07205 | Not Available | Negative | 1662418 - 1662831 | 14899.0 |
| diacylglycerol kinase family protein | DWZ06_07210 | Not Available | Negative | 1662926 - 1663279 | 12967.2 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DWZ06_07215 | Not Available | Negative | 1663301 - 1665514 | 84511.3 |
| duf4301 family protein | DWZ06_07220 | Not Available | Positive | 1665658 - 1667175 | 56797.3 |
| n-glycanase | DWZ06_07225 | Not Available | Positive | 1667295 - 1668545 | 46696.9 |
| dna alkylation repair protein | DWZ06_07230 | Not Available | Negative | 1668650 - 1669366 | 28303.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

