Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | DWZ06_07135 | Not Available | Positive | 1641577 - 1642227 | 24625.3 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DWZ06_07140 | Not Available | Positive | 1642280 - 1643101 | 29580.9 |
| mfs transporter | DWZ06_07145 | Not Available | Positive | 1643116 - 1644282 | 43903.9 |
| energy-dependent translational throttle protein etta | DWZ06_07150 | Not Available | Positive | 1644320 - 1646008 | 63671.1 |
| tonb-dependent receptor | DWZ06_07155 | Not Available | Positive | 1646378 - 1649719 | 123040.0 |
| tonb-dependent receptor | DWZ06_07160 | Not Available | Positive | 1650194 - 1652791 | 95800.9 |
| duf5017 domain-containing protein | DWZ06_07165 | Not Available | Positive | 1652813 - 1654705 | 69713.6 |
| rpn family recombination-promoting nuclease/putative transposase | DWZ06_07170 | Not Available | Positive | 1655103 - 1655960 | 33170.7 |
| 30s ribosomal protein s16 | DWZ06_07175 | Not Available | Negative | 1656035 - 1656586 | 19788.4 |
| ferritin | DWZ06_07180 | Not Available | Positive | 1656793 - 1657275 | 17905.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

