Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DWZ06_07085 | Not Available | Positive | 1630521 - 1631357 | 32696.4 |
| duf417 domain-containing protein | DWZ06_07090 | Not Available | Positive | 1631450 - 1632040 | 21267.4 |
| do family serine endopeptidase | DWZ06_07095 | Not Available | Positive | 1632362 - 1633885 | 53869.6 |
| rna polymerase sigma factor rpod/siga | DWZ06_07100 | Not Available | Positive | 1634125 - 1634985 | 32805.3 |
| hypothetical protein | DWZ06_07105 | Not Available | Positive | 1635207 - 1635602 | 15100.5 |
| clostripain | DWZ06_07110 | Not Available | Positive | 1635613 - 1636875 | 46782.5 |
| hypothetical protein | DWZ06_07115 | Not Available | Negative | 1636859 - 1637257 | 15058.6 |
| divalent metal cation transporter | DWZ06_07120 | Not Available | Positive | 1637360 - 1638613 | 45700.9 |
| potassium/proton antiporter | DWZ06_07125 | Not Available | Negative | 1638690 - 1640138 | 52867.7 |
| mate family efflux transporter | DWZ06_07130 | Not Available | Negative | 1640135 - 1641487 | 49414.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

