Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DWZ06_07030 | Not Available | Positive | 1608641 - 1610650 | 75827.8 |
| bifunctional metallophosphatase/5'-nucleotidase | DWZ06_07035 | Not Available | Positive | 1610655 - 1612397 | 65521.7 |
| hypothetical protein | DWZ06_07040 | Not Available | Positive | 1612402 - 1612740 | 12711.8 |
| tonb-dependent receptor | DWZ06_07045 | Not Available | Positive | 1612872 - 1615205 | 87179.8 |
| hypothetical protein | DWZ06_07055 | Not Available | Negative | 1617481 - 1617690 | 8280.6 |
| six-hairpin glycosidase | DWZ06_07060 | Not Available | Positive | 1617726 - 1621037 | 126700.0 |
| hydrolase | DWZ06_07065 | Not Available | Positive | 1621089 - 1623845 | 104292.0 |
| glycoside hydrolase family 28 protein | DWZ06_07070 | Not Available | Positive | 1623912 - 1625243 | 49440.7 |
| hypothetical protein | DWZ06_07075 | Not Available | Positive | 1625252 - 1626592 | 49757.6 |
| response regulator | DWZ06_07080 | Not Available | Negative | 1627055 - 1630192 | 119522.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

