Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fused gamma-glutamyl-gamma-aminobutyrate hydrolase/peptidase | DWZ06_06870 | Not Available | Positive | 1580879 - 1582636 | 64886.2 |
| glutamine cyclotransferase | DWZ06_06875 | Not Available | Positive | 1582705 - 1583709 | 37858.6 |
| sufe family protein | DWZ06_06880 | Not Available | Positive | 1583721 - 1584149 | 16169.5 |
| tonb-dependent receptor | DWZ06_06885 | Not Available | Negative | 1584185 - 1586257 | 79077.3 |
| sensor histidine kinase | DWZ06_06890 | Not Available | Positive | 1586309 - 1587847 | 59538.5 |
| dna-binding response regulator | DWZ06_06895 | Not Available | Positive | 1587852 - 1588535 | 26125.7 |
| sam-dependent methyltransferase | DWZ06_06900 | Not Available | Negative | 1588532 - 1589716 | 43841.1 |
| d-alanyl-d-alanine dipeptidase | DWZ06_06905 | Not Available | Negative | 1589720 - 1590385 | 25336.8 |
| transcriptional regulator | DWZ06_06910 | Not Available | Negative | 1590409 - 1590756 | 13249.2 |
| thioredoxin | DWZ06_06915 | Not Available | Negative | 1590794 - 1591273 | 17688.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

