Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2807 domain-containing protein | DWZ06_06770 | Not Available | Positive | 1559396 - 1560127 | 25906.5 |
| hypothetical protein | DWZ06_06775 | Not Available | Negative | 1560325 - 1560804 | 18339.8 |
| rna polymerase sigma factor | DWZ06_06780 | Not Available | Negative | 1560794 - 1561303 | 20158.2 |
| acetylglutamate kinase | DWZ06_06785 | Not Available | Negative | 1561367 - 1562140 | 27207.2 |
| biosynthetic arginine decarboxylase | DWZ06_06790 | Not Available | Negative | 1562145 - 1564037 | 71518.0 |
| shikimate kinase | DWZ06_06795 | Not Available | Negative | 1564079 - 1564606 | 20453.7 |
| type i dna topoisomerase | DWZ06_06800 | Not Available | Negative | 1564603 - 1567041 | 91433.3 |
| tonb-dependent receptor | DWZ06_06805 | Not Available | Negative | 1567163 - 1568860 | 64379.8 |
| tetratricopeptide repeat protein | DWZ06_06810 | Not Available | Negative | 1568884 - 1571787 | 111179.0 |
| nudix domain-containing protein | DWZ06_06815 | Not Available | Negative | 1571797 - 1572321 | 19841.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

