Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | DWZ06_00630 | Not Available | Positive | 141902 - 143338 | 52581.3 |
| glycoside hydrolase family 88 protein | DWZ06_00635 | Not Available | Negative | 143545 - 144951 | 53415.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_00640 | Not Available | Negative | 145017 - 147023 | 74841.6 |
| tonb-dependent receptor | DWZ06_00645 | Not Available | Negative | 147041 - 150211 | 118030.0 |
| response regulator | DWZ06_00650 | Not Available | Positive | 150466 - 154743 | 163369.0 |
| arabinosidase | DWZ06_00655 | Not Available | Positive | 154858 - 155862 | 38273.8 |
| duf4038 domain-containing protein | DWZ06_00660 | Not Available | Positive | 155932 - 157395 | 55567.8 |
| hypothetical protein | DWZ06_00665 | Not Available | Positive | 157492 - 158232 | 28001.5 |
| dna helicase | DWZ06_00670 | Not Available | Positive | 158254 - 161580 | 128311.0 |
| mfs transporter | DWZ06_00675 | Not Available | Negative | 161634 - 163109 | 54265.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

