Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination/antitermination protein nusa | DWZ06_06715 | Not Available | Negative | 1541550 - 1542806 | 47697.0 |
| ribosome maturation factor rimp | DWZ06_06720 | Not Available | Negative | 1542809 - 1543276 | 17916.3 |
| hypothetical protein | DWZ06_06725 | Not Available | Positive | 1543415 - 1543834 | 15775.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_06730 | Not Available | Negative | 1543959 - 1545839 | 71442.1 |
| tonb-dependent receptor | DWZ06_06735 | Not Available | Negative | 1545863 - 1548901 | 112001.0 |
| hybrid sensor histidine kinase/response regulator | DWZ06_06740 | Not Available | Positive | 1549056 - 1553363 | 165859.0 |
| mfs transporter araj | DWZ06_06745 | Not Available | Negative | 1553358 - 1554542 | 42205.1 |
| hypothetical protein | DWZ06_06755 | Not Available | Negative | 1556499 - 1557149 | 24825.7 |
| acetylxylan esterase | DWZ06_06760 | Not Available | Negative | 1557254 - 1558564 | 49236.1 |
| m48 family peptidase | DWZ06_06765 | Not Available | Negative | 1558585 - 1559289 | 27179.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

