Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DWZ06_06615 | Not Available | Positive | 1514403 - 1515383 | 38069.7 |
| l-fucose isomerase | DWZ06_06620 | Not Available | Positive | 1515405 - 1517180 | 65668.1 |
| l-fucose:h+ symporter permease | DWZ06_06625 | Not Available | Positive | 1517293 - 1518606 | 48303.3 |
| ribonuclease hii | DWZ06_06630 | Not Available | Negative | 1518749 - 1519354 | 22958.5 |
| tetratricopeptide repeat protein | DWZ06_06635 | Not Available | Positive | 1519456 - 1521081 | 63066.8 |
| tonb-dependent receptor | DWZ06_06640 | Not Available | Positive | 1521305 - 1524433 | 116536.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_06645 | Not Available | Positive | 1524454 - 1525971 | 57946.4 |
| duf340 domain-containing protein | DWZ06_06650 | Not Available | Positive | 1526086 - 1526367 | 10217.2 |
| lysine exporter lyso family protein | DWZ06_06655 | Not Available | Positive | 1526364 - 1526966 | 21649.9 |
| duf4981 domain-containing protein | DWZ06_06660 | Not Available | Positive | 1526980 - 1530156 | 121448.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

