Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_06565 | Not Available | Positive | 1500263 - 1501957 | 63567.8 |
| susf/suse family outer membrane protein | DWZ06_06570 | Not Available | Positive | 1501986 - 1503122 | 41569.2 |
| duf5115 domain-containing protein | DWZ06_06575 | Not Available | Positive | 1503167 - 1504561 | 50653.2 |
| alpha-amylase | DWZ06_06580 | Not Available | Positive | 1504651 - 1507230 | 97661.7 |
| hypothetical protein | DWZ06_06585 | Not Available | Negative | 1507401 - 1508381 | 34914.3 |
| peptidase | DWZ06_06590 | Not Available | Negative | 1508400 - 1510259 | 67221.0 |
| hypothetical protein | DWZ06_06595 | Not Available | Negative | 1510501 - 1511688 | 44438.7 |
| duf3109 family protein | DWZ06_06600 | Not Available | Negative | 1511756 - 1512337 | 22164.6 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DWZ06_06605 | Not Available | Negative | 1512440 - 1513954 | 55852.0 |
| hypothetical protein | DWZ06_06610 | Not Available | Positive | 1514021 - 1514227 | 7440.08 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

