Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-alpha-glucanotransferase | DWZ06_06505 | Not Available | Positive | 1482100 - 1484778 | 104472.0 |
| mfs transporter | DWZ06_06510 | Not Available | Positive | 1484852 - 1486207 | 49040.2 |
| arac family transcriptional regulator | DWZ06_06515 | Not Available | Positive | 1486913 - 1487398 | 19011.1 |
| hypothetical protein | DWZ06_06525 | Not Available | Positive | 1490097 - 1490342 | 9481.4 |
| hypothetical protein | DWZ06_06535 | Not Available | Positive | 1490466 - 1490762 | 11332.5 |
| hypothetical protein | DWZ06_06540 | Not Available | Negative | 1490869 - 1492464 | 62507.7 |
| alpha-amylase | DWZ06_06545 | Not Available | Positive | 1492713 - 1494563 | 70876.0 |
| glycoside hydrolase family 97 protein | DWZ06_06550 | Not Available | Positive | 1494605 - 1496821 | 84341.1 |
| hypothetical protein | DWZ06_06555 | Not Available | Positive | 1496874 - 1497053 | 7024.59 |
| tonb-dependent receptor | DWZ06_06560 | Not Available | Positive | 1497221 - 1500250 | 111498.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

