Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_06345 | Not Available | Negative | 1436227 - 1436979 | 29433.6 |
| glycosyltransferase family 2 protein | DWZ06_06350 | Not Available | Negative | 1436995 - 1437711 | 27429.8 |
| udp-galactopyranose mutase | DWZ06_06355 | Not Available | Negative | 1437795 - 1438901 | 42925.6 |
| acetyltransferase | DWZ06_06360 | Not Available | Negative | 1438904 - 1439827 | 37581.7 |
| glycosyltransferase family 9 protein | DWZ06_06365 | Not Available | Negative | 1439828 - 1440859 | 38600.2 |
| 4-phosphoerythronate dehydrogenase pdxb | DWZ06_06370 | Not Available | Positive | 1440964 - 1441989 | 38267.8 |
| duf4249 domain-containing protein | DWZ06_06375 | Not Available | Negative | 1442154 - 1443119 | 36370.1 |
| tonb-dependent receptor | DWZ06_06380 | Not Available | Negative | 1443126 - 1445780 | 100786.0 |
| fecr family protein | DWZ06_06385 | Not Available | Negative | 1445777 - 1446580 | 30911.8 |
| rna polymerase sigma-70 factor | DWZ06_06390 | Not Available | Negative | 1446650 - 1447159 | 19967.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

