Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_06295 | Not Available | Positive | 1427307 - 1427723 | 16030.5 |
| dna-binding protein | DWZ06_06300 | Not Available | Positive | 1427943 - 1428266 | 12823.8 |
| dna-binding protein | DWZ06_06305 | Not Available | Positive | 1428279 - 1428572 | 11482.2 |
| dna-binding protein | DWZ06_06310 | Not Available | Positive | 1428569 - 1428880 | 12395.9 |
| site-specific integrase | DWZ06_06315 | Not Available | Negative | 1428905 - 1430230 | 51879.1 |
| site-specific integrase | DWZ06_06320 | Not Available | Negative | 1430251 - 1431474 | 46329.9 |
| glycosyltransferase family 4 protein | DWZ06_06325 | Not Available | Negative | 1432106 - 1433284 | 45783.6 |
| glycosyl transferase | DWZ06_06330 | Not Available | Negative | 1433281 - 1434174 | 35441.0 |
| glycosyltransferase family 2 protein | DWZ06_06335 | Not Available | Negative | 1434174 - 1435085 | 35725.8 |
| glycosyltransferase | DWZ06_06340 | Not Available | Negative | 1435313 - 1436212 | 34420.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

