Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein trak | DWZ06_06005 | Not Available | Negative | 1375176 - 1375799 | 24237.9 |
| conjugative transposon protein traj | DWZ06_06010 | Not Available | Negative | 1375820 - 1376824 | 36979.3 |
| duf4141 domain-containing protein | DWZ06_06015 | Not Available | Negative | 1376843 - 1377475 | 24016.0 |
| hypothetical protein | DWZ06_06020 | Not Available | Negative | 1377516 - 1378130 | 23852.5 |
| trag family conjugative transposon atpase | DWZ06_06025 | Not Available | Negative | 1378164 - 1380662 | 95619.1 |
| duf4133 domain-containing protein | DWZ06_06030 | Not Available | Negative | 1380659 - 1380991 | 12603.0 |
| duf4134 domain-containing protein | DWZ06_06035 | Not Available | Negative | 1380994 - 1381290 | 10348.8 |
| hypothetical protein | DWZ06_06040 | Not Available | Negative | 1381588 - 1381920 | 13307.3 |
| hypothetical protein | DWZ06_06045 | Not Available | Negative | 1381992 - 1382234 | 9063.55 |
| duf4122 domain-containing protein | DWZ06_06050 | Not Available | Negative | 1382237 - 1383013 | 29567.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

