Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf932 domain-containing protein | DWZ06_05950 | Not Available | Positive | 1365921 - 1366844 | 35118.0 |
| hypothetical protein | DWZ06_05960 | Not Available | Positive | 1367377 - 1369074 | 63077.6 |
| hypothetical protein | DWZ06_05965 | Not Available | Positive | 1369240 - 1369893 | 24882.1 |
| glycoside hydrolase | DWZ06_05970 | Not Available | Negative | 1370058 - 1370570 | 19921.4 |
| duf3872 domain-containing protein | DWZ06_05975 | Not Available | Negative | 1370584 - 1371087 | 19272.9 |
| dna primase | DWZ06_05980 | Not Available | Negative | 1371121 - 1371999 | 33469.9 |
| conjugal transfer protein | DWZ06_05985 | Not Available | Negative | 1372006 - 1372578 | 21090.5 |
| conjugative transposon protein tran | DWZ06_05990 | Not Available | Negative | 1372581 - 1373552 | 36485.0 |
| conjugative transposon protein tram | DWZ06_05995 | Not Available | Negative | 1373573 - 1374865 | 46622.9 |
| duf3989 domain-containing protein | DWZ06_06000 | Not Available | Negative | 1374870 - 1375163 | 11469.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

