Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease e/g | DWZ06_05785 | Not Available | Positive | 1340320 - 1341894 | 59703.8 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_05790 | Not Available | Negative | 1342066 - 1342872 | 30760.1 |
| tlpa family protein disulfide reductase | DWZ06_05795 | Not Available | Negative | 1342879 - 1343421 | 20293.0 |
| hypothetical protein | DWZ06_05800 | Not Available | Positive | 1343653 - 1344261 | 23097.2 |
| lysine--trna ligase | DWZ06_05805 | Not Available | Positive | 1344336 - 1346066 | 66493.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DWZ06_05810 | Not Available | Positive | 1346123 - 1347118 | 37117.2 |
| glucose-6-phosphate isomerase | DWZ06_05815 | Not Available | Positive | 1347132 - 1348475 | 49078.8 |
| had family hydrolase | DWZ06_05820 | Not Available | Positive | 1348625 - 1349359 | 27115.4 |
| hypothetical protein | DWZ06_05830 | Not Available | Negative | 1349946 - 1350368 | 16053.2 |
| hypothetical protein | DWZ06_05835 | Not Available | Negative | 1350703 - 1350852 | 5572.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

