Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ06_05685 | Not Available | Positive | 1319588 - 1320433 | 32493.7 |
| s9 family peptidase | DWZ06_05690 | Not Available | Negative | 1320567 - 1323017 | 91330.2 |
| duf4891 domain-containing protein | DWZ06_05695 | Not Available | Negative | 1323106 - 1323504 | 14987.3 |
| duf308 domain-containing protein | DWZ06_05700 | Not Available | Negative | 1323515 - 1324081 | 20327.0 |
| ytxh domain-containing protein | DWZ06_05705 | Not Available | Positive | 1324563 - 1324823 | 9298.99 |
| tryptophan synthase subunit beta | DWZ06_05710 | Not Available | Positive | 1325074 - 1326273 | 43987.0 |
| anthranilate synthase component i family protein | DWZ06_05715 | Not Available | Positive | 1326334 - 1327734 | 52812.4 |
| aminodeoxychorismate/anthranilate synthase component ii | DWZ06_05720 | Not Available | Positive | 1327747 - 1328337 | 21659.1 |
| anthranilate phosphoribosyltransferase | DWZ06_05725 | Not Available | Positive | 1328359 - 1329354 | 36453.1 |
| indole-3-glycerol phosphate synthase trpc | DWZ06_05730 | Not Available | Positive | 1329393 - 1330181 | 29293.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

