Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trao | DWZ06_00520 | Not Available | Positive | 123760 - 124335 | 21053.4 |
| dna primase | DWZ06_00525 | Not Available | Positive | 124344 - 125243 | 33701.4 |
| duf3872 domain-containing protein | DWZ06_00530 | Not Available | Positive | 125243 - 125749 | 19367.9 |
| lysozyme | DWZ06_00535 | Not Available | Positive | 125746 - 126273 | 20311.0 |
| hypothetical protein | DWZ06_00540 | Not Available | Negative | 126336 - 126557 | 8090.73 |
| hypothetical protein | DWZ06_00545 | Not Available | Negative | 126674 - 126982 | 11793.3 |
| hypothetical protein | DWZ06_00550 | Not Available | Negative | 127036 - 127341 | 11151.9 |
| duf3873 domain-containing protein | DWZ06_00555 | Not Available | Negative | 127281 - 127499 | 8460.93 |
| hypothetical protein | DWZ06_00560 | Not Available | Negative | 127531 - 127788 | 10367.5 |
| pcfj-like protein | DWZ06_00565 | Not Available | Negative | 127813 - 129078 | 48776.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

