Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ytxh domain-containing protein | DWZ06_05630 | Not Available | Positive | 1304115 - 1304312 | 6773.24 |
| phage holin family protein | DWZ06_05635 | Not Available | Positive | 1304391 - 1304747 | 13343.2 |
| hypothetical protein | DWZ06_05640 | Not Available | Positive | 1304750 - 1305016 | 10057.5 |
| peptidase s41 | DWZ06_05645 | Not Available | Positive | 1305046 - 1308306 | 123024.0 |
| d-xylose transporter xyle | DWZ06_05655 | Not Available | Negative | 1309492 - 1310931 | 52816.6 |
| duf1705 domain-containing protein | DWZ06_05660 | Not Available | Negative | 1310982 - 1312688 | 64929.2 |
| hypothetical protein | DWZ06_05665 | Not Available | Negative | 1312675 - 1313862 | 45371.2 |
| tolc family protein | DWZ06_05670 | Not Available | Negative | 1314011 - 1315303 | 48422.8 |
| acrb/acrd/acrf family protein | DWZ06_05675 | Not Available | Negative | 1315303 - 1318350 | 112618.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_05680 | Not Available | Negative | 1318369 - 1319424 | 38693.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

