Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | DWZ06_05580 | Not Available | Negative | 1292703 - 1293299 | 22643.4 |
| threonine--trna ligase | DWZ06_05585 | Not Available | Negative | 1293415 - 1295355 | 74203.1 |
| tetratricopeptide repeat protein | DWZ06_05590 | Not Available | Negative | 1295436 - 1297445 | 77260.5 |
| peptide deformylase | DWZ06_05595 | Not Available | Negative | 1297518 - 1298072 | 21050.7 |
| holliday junction resolvase ruvx | DWZ06_05600 | Not Available | Negative | 1298096 - 1298515 | 15806.4 |
| hypothetical protein | DWZ06_05605 | Not Available | Positive | 1298721 - 1299959 | 47727.3 |
| duf3869 domain-containing protein | DWZ06_05610 | Not Available | Positive | 1299970 - 1300860 | 31151.8 |
| ompa family protein | DWZ06_05615 | Not Available | Positive | 1300916 - 1301989 | 38634.8 |
| glycoside hydrolase xylanase | DWZ06_05620 | Not Available | Negative | 1302322 - 1303281 | 35416.5 |
| spor domain-containing protein | DWZ06_05625 | Not Available | Negative | 1303407 - 1303904 | 17961.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

