Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DWZ06_05530 | Not Available | Negative | 1282146 - 1282976 | 31630.1 |
| hypothetical protein | DWZ06_05535 | Not Available | Negative | 1283452 - 1285491 | 79671.4 |
| alpha-l-fucosidase | DWZ06_05540 | Not Available | Negative | 1285510 - 1286859 | 51875.6 |
| dna/rna non-specific endonuclease | DWZ06_05545 | Not Available | Positive | 1286984 - 1287841 | 32389.9 |
| alpha-n-arabinofuranosidase | DWZ06_05550 | Not Available | Negative | 1287931 - 1289454 | 57343.5 |
| hypothetical protein | DWZ06_05555 | Not Available | Positive | 1289468 - 1289653 | 7166.81 |
| endolytic transglycosylase mltg | DWZ06_05560 | Not Available | Positive | 1289655 - 1290689 | 39576.9 |
| 4fe-4s ferredoxin | DWZ06_05565 | Not Available | Negative | 1290728 - 1291507 | 29051.1 |
| 50s ribosomal protein l20 | DWZ06_05570 | Not Available | Negative | 1291972 - 1292322 | 13181.3 |
| 50s ribosomal protein l35 | DWZ06_05575 | Not Available | Negative | 1292434 - 1292631 | 7367.31 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

