Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylneuraminate synthase | DWZ06_05480 | Not Available | Negative | 1273094 - 1274098 | 36911.4 |
| atp-grasp domain-containing protein | DWZ06_05485 | Not Available | Negative | 1274091 - 1275083 | 37688.1 |
| diaminopimelate decarboxylase | DWZ06_05490 | Not Available | Negative | 1275101 - 1276276 | 44601.6 |
| udp-n-acetylglucosamine 2-epimerase (hydrolyzing) | DWZ06_05495 | Not Available | Negative | 1276263 - 1277396 | 42124.0 |
| legc family aminotransferase | DWZ06_05500 | Not Available | Negative | 1277393 - 1278547 | 43371.6 |
| nucleoside-diphosphate sugar epimerase | DWZ06_05505 | Not Available | Negative | 1278566 - 1279774 | 45770.0 |
| hypothetical protein | DWZ06_05510 | Not Available | Negative | 1280011 - 1280445 | 16460.7 |
| dna-binding protein | DWZ06_05515 | Not Available | Positive | 1280633 - 1281133 | 17891.4 |
| hypothetical protein | DWZ06_05520 | Not Available | Positive | 1281130 - 1281522 | 14700.0 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_05525 | Not Available | Positive | 1281661 - 1282080 | 15438.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

