Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase large subunit | DWZ06_05310 | Not Available | Positive | 1240231 - 1244709 | 164847.0 |
| glutamate synthase subunit beta | DWZ06_05315 | Not Available | Positive | 1244750 - 1246090 | 48805.7 |
| asparagine synthase b | DWZ06_05320 | Not Available | Positive | 1246107 - 1247777 | 62823.6 |
| hypothetical protein | DWZ06_05325 | Not Available | Positive | 1247856 - 1248089 | 8584.44 |
| hypothetical protein | DWZ06_05330 | Not Available | Positive | 1248025 - 1248306 | 11031.4 |
| hypothetical protein | DWZ06_05335 | Not Available | Positive | 1248264 - 1248482 | 8844.55 |
| carboxypeptidase regulatory-like domain-containing protein | DWZ06_05340 | Not Available | Positive | 1248556 - 1249380 | 31867.4 |
| Trna-thr | Not Available | Not Available | Positive | 1249405 - 1249480 | Not Available |
| atp-dependent helicase | DWZ06_05350 | Not Available | Negative | 1249842 - 1252148 | 87188.9 |
| hypothetical protein | DWZ06_05365 | Not Available | Negative | 1253535 - 1253810 | 10591.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

