Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DWZ06_05260 | Not Available | Negative | 1224035 - 1227259 | 119651.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DWZ06_05265 | Not Available | Negative | 1227283 - 1228359 | 39950.5 |
| amidophosphoribosyltransferase | DWZ06_05270 | Not Available | Negative | 1228385 - 1230268 | 71311.8 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DWZ06_05275 | Not Available | Negative | 1230431 - 1232275 | 67644.3 |
| glutamine synthetase type iii | DWZ06_05280 | Not Available | Negative | 1232589 - 1234778 | 82007.6 |
| ammonium transporter | DWZ06_05285 | Not Available | Negative | 1234836 - 1236194 | 47652.5 |
| p-ii family nitrogen regulator | DWZ06_05290 | Not Available | Negative | 1236270 - 1236626 | 13455.3 |
| hypothetical protein | DWZ06_05295 | Not Available | Negative | 1236744 - 1237469 | 25629.8 |
| ll-diaminopimelate aminotransferase | DWZ06_05300 | Not Available | Negative | 1237588 - 1238817 | 45866.9 |
| diaminopimelate epimerase | DWZ06_05305 | Not Available | Negative | 1238864 - 1239706 | 30283.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

