Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4134 domain-containing protein | DWZ06_00470 | Not Available | Positive | 115079 - 115390 | 10655.1 |
| duf4133 domain-containing protein | DWZ06_00475 | Not Available | Positive | 115401 - 115733 | 12566.7 |
| trag family conjugative transposon atpase | DWZ06_00480 | Not Available | Positive | 115730 - 118234 | 96456.9 |
| duf3876 domain-containing protein | DWZ06_00485 | Not Available | Positive | 118272 - 118655 | 14460.4 |
| duf4141 domain-containing protein | DWZ06_00490 | Not Available | Positive | 118686 - 119315 | 24171.3 |
| conjugative transposon protein traj | DWZ06_00495 | Not Available | Positive | 119319 - 120323 | 37181.9 |
| conjugative transposon protein trak | DWZ06_00500 | Not Available | Positive | 120355 - 120978 | 24030.7 |
| duf3989 domain-containing protein | DWZ06_00505 | Not Available | Positive | 120985 - 121293 | 11768.5 |
| conjugative transposon protein tram | DWZ06_00510 | Not Available | Positive | 121274 - 122629 | 48966.9 |
| conjugative transposon protein tran | DWZ06_00515 | Not Available | Positive | 122699 - 123757 | 39739.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

