Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF29-13
Accession NumberQRSX00000000.1
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_00005 | Not Available | + | 1 - 189 | 6617.96 |
| low specificity l-threonine aldolase | DWZ06_00010 | Not Available | - | 208 - 1224 | 37832.5 |
| tonb-dependent receptor | DWZ06_00015 | Not Available | + | 1390 - 4155 | 104480.0 |
| hypothetical protein | DWZ06_00020 | Not Available | + | 4192 - 5769 | 56712.6 |
| mannose-6-phosphate isomerase | DWZ06_00025 | Not Available | + | 5883 - 6854 | 36186.5 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | + | 7273 - 7642 | Not Available |
| lactonase family protein | DWZ06_00030 | Not Available | - | 6946 - 8112 | 42758.9 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | + | 8253 - 8647 | Not Available |
| alpha-l-fucosidase | DWZ06_00040 | Not Available | - | 8828 - 10153 | 50388.9 |
| gtp-binding protein | DWZ06_00045 | Not Available | + | 10302 - 11552 | 47753.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
