Phocaeicola plebeius strain AF39-11

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain AF39-11 is a Gram-negative, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, deriving its energy from organic compounds. This strain is strictly anaerobic, indicating that it thrives in environments devoid of oxygen. P. plebeius strain AF39-11 is part of the intestinal microflora of animals, suggesting a symbiotic relationship with its host organisms. The anaerobic nature of this bacterium highlights its adaptation to the anaerobic conditions typically found in the intestines, where it may play a role in the fermentation of dietary components and contribute to the overall microbial balance within the gastrointestinal tract. Given its classification within the animal intestinal microflora, P. plebeius strain AF39-11 may also be involved in various metabolic processes that are essential for digestion and nutrient absorption. As a member of the gut microbiota, the ecological role of P. plebeius strain AF39-11 could extend beyond mere symbiosis; it may participate in the modulation of host immune responses or influence the metabolic pathways in the gut environment. Future studies could elucidate its specific contributions to gut health and its interactions with other microbial species within the complex ecosystem of the intestinal tract.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain AF39-11
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain AF39-11

Accession NumberQROI00000000.1

Gene Summary

Adenine Count

1032276 bp

Thymine Count

1042933 bp

Guanine Count

824714 bp

Cytosine Count

828950 bp

Genome Length

3729283 bp

Protein-coding Genes

3024 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
1_nc_021804: hypothetical proteinDW035_01190Not Available+298149 - 29857716563.8
1_nc_021804: hypothetical proteinDW035_01195Not Available+298607 - 29936528475.9
Replisome organizerDW035_01200Not Available+299427 - 30020929968.9
Dna replication protein dnacDW035_01205Not Available+300244 - 30078920952.2
2_nc_021806: nucleoside triphosphate pyrophosphohydrolase, mazgDW035_01210Not Available+300786 - 30134922327.4
Putative dna n-6-adenine-methyltransferaseDW035_01215Not Available+301369 - 30186018583.1
hypothetical proteinDW035_01220Not Available+301862 - 30231717640.0
Hypothetical proteinDW035_01225Not Available+302636 - 30344831105.5
ExonucleaseDW035_01230Not Available+303445 - 30401721681.9
hypothetical proteinDW035_01235Not Available+304022 - 30441414995.0

Displaying genes 11 – 20 of 3121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

327 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 327 metabolites