Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DW035_00280 | Not Available | + | 81124 - 83196 | 80540.9 |
| ribonuclease r | DW035_00285 | Not Available | - | 83271 - 85421 | 81636.3 |
| cation transporter | DW035_00290 | Not Available | + | 85570 - 86472 | 32571.5 |
| nad(p)-dependent oxidoreductase | DW035_00295 | Not Available | + | 86477 - 87487 | 38978.1 |
| phosphatase pap2 family protein | DW035_00300 | Not Available | + | 87484 - 88458 | 37973.0 |
| trna dihydrouridine synthase dusb | DW035_00305 | Not Available | - | 88474 - 89460 | 36846.1 |
| u32 family peptidase | DW035_00310 | Not Available | + | 89549 - 90820 | 47593.3 |
| duf3843 family protein | DW035_00315 | Not Available | + | 91102 - 92598 | 57753.7 |
| trna 2-thiouridine(34) synthase mnma | DW035_00320 | Not Available | - | 92599 - 93648 | 39729.0 |
| hypothetical protein | DW035_00330 | Not Available | + | 96891 - 99194 | 88396.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
